Previous research shows that the amygdala automatically responds to a face's trustworthiness when a face is clearly visible. However, it is unclear whether the amygdala could evaluate such high-level facial information without a face being consciously perceived. Using a backward masking paradigm, we demonstrate in two functional neuroimaging experiments that the human amygdala is sensitive to subliminal variation in facial trustworthiness. Regions in the amygdala tracked how untrustworthy a face appeared (i.e., negative-linear responses) as well as the overall strength of a face's trustworthiness signal (i.e., nonlinear responses), despite faces not being subjectively seen. This tracking was robust across blocked and event-related designs and both real and computer-generated faces. The findings demonstrate that the amygdala can be influenced by even high-level facial information before that information is consciously perceived, suggesting that the amygdala's processing of social cues in the absence of awareness may be more extensive than previously described.